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1

Surface Complexation-Based Biocompatible Magnetofluorescent Nanoprobe for Targeted Cellular Imaging

Bhandari, Satyapriya, Khandelia, Rumi, Pan, Uday Narayan, Chattopadhyay, Arun

Journal:

ACS Applied Materials & Interfaces

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

2

Interaction of Salicylate and a Terpenoid Plant Extract with Model Membranes: Reconciling Experiments and Simulations

Khandelia, Himanshu, Witzke, Sarah, Mouritsen, Ole G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 412 KB

english, 2010

3

The name of deliciousness and the gastrophysics behind it

Mouritsen, Ole G, Duelund, Lars, Bagatolli, Luis A, Khandelia, Himanshu

Journal:

Year:

2013

Language:

english

File:

PDF, 393 KB

english, 2013

4

Inclusion of Terpenoid Plant Extracts in Lipid Bilayers Investigated by Molecular Dynamics Simulations †

Witzke, Sarah, Duelund, Lars, Kongsted, Jacob, Petersen, Michael, Mouritsen, Ole G., Khandelia, Himanshu

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 3.25 MB

english, 2010

5

An overview of molecular dynamics simulations of oxidized lipid systems, with a comparison of ELBA and MARTINI force fields for coarse grained lipid simulations

Siani, P., de Souza, R.M., Dias, L.G., Itri, R., Khandelia, H.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2016

Language:

english

File:

PDF, 1.77 MB

english, 2016

6

Characterisation of musculoskeletal tumours by multivoxel proton MR spectroscopy

Patni, Ruchi S., Boruah, Deb K., Sanyal, Shantiranjan, Gogoi, Bidyut B., Patni, Maninder, Khandelia, Rosy, Gogoi, Nripen

Journal:

Skeletal Radiology

Year:

2017

Language:

english

File:

PDF, 13.65 MB

english, 2017

7

The CAPOS mutation in ATP1A3 alters Na/K-ATPase function and results in auditory neuropathy which has implications for management

Tranebjærg, Lisbeth, Strenzke, Nicola, Lindholm, Sture, Rendtorff, Nanna D., Poulsen, Hanne, Khandelia, Himanshu, Kopec, Wojciech, Lyngbye, Troels J. Brünnich, Hamel, Christian, Delettre, Cecile, Bocq

Journal:

Year:

2018

Language:

english

File:

PDF, 1.79 MB

english, 2018

8

How can a β-sheet peptide be both a potent antimicrobial and harmfully toxic? Molecular dynamics simulations of protegrin-1 in micelles

Allison A. Langham, Himanshu Khandelia, Yiannis N. Kaznessis

Journal:

Year:

2006

Language:

english

File:

PDF, 1.05 MB

english, 2006

9

Neurological disease mutations compromise a C-terminal ion pathway in the Na+/K+-ATPase

Poulsen, Hanne, Khandelia, Himanshu, Morth, J. Preben, Bublitz, Maike, Mouritsen, Ole G., Egebjerg, Jan, Nissen, Poul

Journal:

Year:

2010

Language:

english

File:

PDF, 995 KB

english, 2010

10

Intermediate Representations for Design Automation of Multiprocessor DSP Systems

Neal Bambha, Vida Kianzad, Mukul Khandelia, Shuvra S. Bhattacharyya

Journal:

Design Automation for Embedded Systems

Year:

2002

Language:

english

File:

PDF, 331 KB

english, 2002

11

Ion transport by the sodium pump

Hanne Poulsen, Himanshu Khandelia, Preben Morth, Maike Bublitz, Ole G. Mouritsen, Jan Egebjerg, Poul Nissen

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2010

Language:

english

File:

PDF, 124 KB

english, 2010

12

Molecular mechanism of the allosteric enhancement of the umami taste sensation

Ole G. Mouritsen, Himanshu Khandelia

Journal:

Year:

2012

Language:

english

File:

PDF, 341 KB

english, 2012

13

Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

Yap, K., Lim, Z. Q., Khandelia, P., Friedman, B., Makeyev, E. V.

Journal:

Genes & Development

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

14

Driving engineering of novel antimicrobial peptides from simulations of peptide–micelle interactions

Himanshu Khandelia, Allison A. Langham, Yiannis N. Kaznessis

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2006

Language:

english

File:

PDF, 867 KB

english, 2006

15

Structure of the antimicrobial β-hairpin peptide protegrin-1 in a DLPC lipid bilayer investigated by molecular dynamics simulation

Himanshu Khandelia, Yiannis N. Kaznessis

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2007

Language:

english

File:

PDF, 1.83 MB

english, 2007

16

The impact of peptides on lipid membranes

Himanshu Khandelia, John H. Ipsen, Ole G. Mouritsen

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2008

Language:

english

File:

PDF, 1.65 MB

english, 2008

17

Corrigendum to “Structure of the antimicrobial β-hairpin peptide protegrin-1 in a DLPC lipid bilayer investigated by molecular dynamics simulation” [Biochim. Biophys. Acta 1768 (2007) 509–520]

Himanshu Khandelia, Yiannis N. Kaznessis

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2010

Language:

english

File:

PDF, 192 KB

english, 2010

18

Molecular dynamics simulations of helical antimicrobial peptides in SDS micelles: What do point mutations achieve?

Himanshu Khandelia, Yiannis N. Kaznessis

Journal:

Year:

2005

Language:

english

File:

PDF, 1.00 MB

english, 2005

19

Molecular dynamics investigation of the influence of anionic and zwitterionic interfaces on antimicrobial peptides’ structure: Implications for peptide toxicity and activity

Himanshu Khandelia, Yiannis N. Kaznessis

Journal:

Year:

2006

Language:

english

File:

PDF, 722 KB

english, 2006

20

Correlation between simulated physicochemical properties and hemolycity of protegrin-like antimicrobial peptides: Predicting experimental toxicity

Allison A. Langham, Himanshu Khandelia, Benjamin Schuster, Alan J. Waring, Robert I. Lehrer, Yiannis N. Kaznessis

Journal:

Year:

2008

Language:

english

File:

PDF, 1.10 MB

english, 2008

21

High-Affinity Small Molecule−Phospholipid Complex Formation: Binding of Siramesine to Phosphatidic Acid

Parry, Mikko J., Alakoskela, Juha-Matti I., Khandelia, Himanshu, Kumar, Subramanian Arun, Jäättelä, Marja, Mahalka, Ajay K., Kinnunen, Paavo K. J.

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 380 KB

english, 2008

22

Lipid peroxidation and water penetration in lipid bilayers: A W-band EPR study

Elena Conte, Francesco Maria Megli, Himanshu Khandelia, Gunnar Jeschke, Enrica Bordignon

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

23

Lipid Gymnastics: Evidence of Complete Acyl Chain Reversal in Oxidized Phospholipids from Molecular Simulations

Khandelia, Himanshu, Mouritsen, Ole G.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 921 KB

english, 2009

24

Contention-conscious transaction ordering in multiprocessor DSP systems

Khandelia, M., Bambha, N.K., Bhattacharyya, S.S.

Journal:

IEEE Transactions on Signal Processing

Year:

2006

Language:

english

File:

PDF, 866 KB

english, 2006

25

Molecular dynamics simulations of the interactions of medicinal plant extracts and drugs with lipid bilayer membranes

Kopeć, Wojciech, Telenius, Jelena, Khandelia, Himanshu

Journal:

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

26

Novel Ultrathin Membranes Composed of Organic Ions

Chaban, Vitaly V., Verspeek, Bram, Khandelia, Himanshu

Journal:

The Journal of Physical Chemistry Letters

Year:

2013

Language:

english

File:

PDF, 2.73 MB

english, 2013

27

Gold Nanoparticle-Protein Agglomerates as Versatile Nanocarriers for Drug Delivery

Khandelia, Rumi, Jaiswal, Amit, Ghosh, Siddhartha Sankar, Chattopadhyay, Arun

Journal:

Year:

2013

Language:

english

File:

PDF, 2.24 MB

english, 2013

28

Reinforcing the membrane-mediated mechanism of action of the anti-tuberculosis candidate drug thioridazine with molecular simulations

Kopec, Wojciech, Khandelia, Himanshu

Journal:

Journal of Computer-Aided Molecular Design

Year:

2014

Language:

english

File:

PDF, 1.64 MB

english, 2014

29

Propofol modulates the lipid phase transition and localizes near the headgroup of membranes

Hansen, Anders Højgaard, Sørensen, Kristian Tølbøl, Mathieu, Richard, Serer, Alois, Duelund, Lars, Khandelia, Himanshu, Hansen, Per Lyngs, Simonsen, Adam Cohen

Journal:

Chemistry and Physics of Lipids

Year:

2013

Language:

english

File:

PDF, 2.27 MB

english, 2013

30

Shape Pairing of Cholesterol with Oxidized Phospholipid Species in Lipid Bilayers

Loubet, Bastien, Jurkiewicz, Piotr, Olzynska, Agnieszka, Hof, Martin, Khandelia, Himanshu

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 84 KB

english, 2014

31

Conformations of double-headed, triple-tailed phospholipid oxidation lipid products in model membranes

Hermetter, Albin, Kopec, Wojciech, Khandelia, Himanshu

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2013

Language:

english

File:

PDF, 1.63 MB

english, 2013

32

Application of the Virtual Site Technique to Lipids in Gromacs, Hydrogens Degrees of Freedom Removal and Performance Increase

Loubet, Bastien, Kopec, Wojciech, Khandelia, Himanshu

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 43 KB

english, 2014

33

Fluctuation Spectrum and Electrical Stresses in Biomembranes Probed by Molecular Dynamics Simulations

Loubet, Bastien, Lomholt, Michael A., Khandelia, Himanshu

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

34

Lipid Gymnastics: Complete Acyl Chain Reversal in Oxidized Phospholipids: Evidence from Molecular Simulations

Khandelia, Himanshu, Mouritsen, Ole G.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 62 KB

english, 2009

35

Molecular Insights Into The Modulation Of Sodium Binding Affinity And Voltage Sensitivity Of The Sodium-Potassium Pump From Molecular Dynamics Simulations, Electrophysiology And Structure

Khandelia, Himanshu, Poulsen, Hanne, Morth, J. Preben, Nissen, Poul, Mouritsen, Ole G.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 98 KB

english, 2009

36

Glutathionylation of the Na K Pump

Kopec, Wojciech, Loubet, Bastien, Khandelia, Himanshu

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

37

Self-Assembly Simulations of Membranes Containing Phospholipid Oxidation Products

Khandelia, Himanshu, Mouritsen, Ole G.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

38

The Molecular Mechanism of Na+, K+-ATPase Malfunction in Mutations Characteristic for Adrenal Hypertension

Kopec, Wojciech, Loubet, Bastien, Poulsen, Hanne, Khandelia, Himanshu

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 66 KB

english, 2014

39

Cation−π Interactions Stabilize the Structure of the Antimicrobial Peptide Indolicidin near Membranes: Molecular Dynamics Simulations

Khandelia, Himanshu, Kaznessis, Yiannis N.

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 669 KB

english, 2007

40

To Gate or Not To Gate: Using Molecular Dynamics Simulations To Morph Gated Plant Aquaporins into Constitutively Open Conformations

Khandelia, Himanshu, Jensen, Morten Ø., Mouritsen, Ole G.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 318 KB

english, 2009

41

Accelerating All-Atom MD Simulations of Lipids Using a Modified Virtual-Sites Technique

Loubet, Bastien, Kopec, Wojciech, Khandelia, Himanshu

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 1.47 MB

english, 2014

42

Lipid Structure in Triolein Lipid Droplets

Chaban, Vitaly V., Khandelia, Himanshu

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.62 MB

english, 2014

43

Molecular Mechanism of Na + ,K + -ATPase Malfunction in Mutations Characteristic of Adrenal Hypertension

Kopec, Wojciech, Loubet, Bastien, Poulsen, Hanne, Khandelia, Himanshu

Journal:

Year:

2014

Language:

english

File:

PDF, 3.48 MB

english, 2014

44

Distribution of Neutral Lipids in the Lipid Droplet Core

Chaban, Vitaly V., Khandelia, Himanshu

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.96 MB

english, 2014

45

Molecular Dynamics Simulations of the Helical Antimicrobial Peptide Ovispirin-1 in a Zwitterionic Dodecylphosphocholine Micelle: Insights into Host-Cell Toxicity

Khandelia, Himanshu, Kaznessis, Yiannis N.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 587 KB

english, 2005

46

Signatures of specificity of interactions of binary protein mixtures with citrate-stabilized gold nanoparticles

Khandelia, Rumi, Deka, Jashmini, Paul, Anumita, Chattopadhyay, Arun

Journal:

Year:

2012

Language:

english

File:

PDF, 1.29 MB

english, 2012

47

Polymer coated gold nanoparticle–protein agglomerates as nanocarriers for hydrophobic drug delivery

Khandelia, Rumi, Jaiswal, Amit, Ghosh, Siddhartha Sankar, Chattopadhyay, Arun

Journal:

Journal of Materials Chemistry B

Year:

2014

Language:

english

File:

PDF, 715 KB

english, 2014

48

Tension moderation and fluctuation spectrum in simulated lipid membranes under an applied electric potential

Loubet, Bastien, Lomholt, Michael Andersen, Khandelia, Himanshu

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 522 KB

english, 2013

49

[IEEE Comput. Soc 2000 International Conference on Application-Specific Systems, Architectures, and Processors - Boston, MA, USA (10-12 July 2000)] Proceedings IEEE International Conference on Application-Specific Systems, Architectures, and Processors - Contention-conscious transaction ordering in embedded multiprocessors

Khandelia, M., Bhattacharyya, S.S.

Year:

2000

Language:

english

File:

PDF, 181 KB

english, 2000

50

Nanocarriers: Gold Nanoparticle-Protein Agglomerates as Versatile Nanocarriers for Drug Delivery (Small 20/2013)

Khandelia, Rumi, Jaiswal, Amit, Ghosh, Siddhartha Sankar, Chattopadhyay, Arun

Journal:

Year:

2013

Language:

english

File:

PDF, 531 KB

english, 2013